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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889183.1_cds_XP_016443875.1_38998
CDS Infomation

[gene=LOC107769187] [db_xref=GeneID:107769187] [protein=staphylococcal nuclease domain-containing protein 1-like] [protein_id=XP_016443875.1] [location=join(195913..196050,196145..196219,196308..196421,196514..196615,197234..197440,197531..197746,197819..197926,198636..198806,198893..199090,199168..199521,199602..199832,199915..200103,200210..200287,200420..200614,202046..202423,202781..202969)] [gbkey=CDS]
Sequence

ATGGCATCAACAGGATGGTTGAAGGGAAGAGTGAAAGCCGTTCTCTCTGGTGACAGTTTG
GTGATAATGGGTAGTTCCAAGGCTGAAATCCCCCCTGAAAAATCTATTACCTTAGCATCT
CTAATGGCTCCACGATTGGCACGTCGTGGTGGGGTGGATGAGCCATTTGCATGGCAAAGC
AGAGAGTTCTTGAGGAAGCTTTGCATTGGAAAGGAGGTCACTTTCAAGGTGGAATATACT
GTACCTTCAATAGGGAGGGAATATGGCACTGTTTTTCTTGGCGACAAGAATGTTTCCATG
CTAGTTGTTGCTTCAGGCTGGGCCAAGGTCAGGGAGCAGGGCCAACAGAAAGATGCTAAC
CCCTATTTAAAACCGCTGCAAGATGCTGAAGAACAAGCTAAGCAACAAGGTCTAGGTCGT
TGGAGTAGGGCACCTGGTGCTTCTGAGGCATCTATTAGGAATCTACCTCTATCTGCAATC
GGTGATCCTAGTATCTTTGATGCAAGGGGCCTTTTGGAGGAAAATAAAGGTAAGCTGATA
GAAGCATTTGTTGAGCAGGTTCGTGATGGAAGTACACTGCGAGTGTACTTGCTTCCAGAC
TTCCAGTTCATCCAAGTGTTCGTTGCCGGAATACAGGCACCAACTATGGGAAGAAGAGCA
ACATCAGAAACTGTTGTTAATGCTAGTATTACCTCTGATGAACCAAACGGAGAATCAACT
ACTGAACCTCGTGCTACTCCGACAACAGCTCAGAGGCTGGCAGCCTCAGCAACATCTGTA
TCAGAAGTTGCTCCTGATCCATATGGCAGAGAAGCAAAGCATTTTACCGAAACTCGTGTG
TTAAATAGAGATGTTCGGATTGTCCTGGAGGGCGTTGACAAGTTTAGCAATCTGATTGGC
TCAGTGTACTATCCTGATGGAGAATCGGCAAAAAACCTGGGTTTGGAGCTTGTTGAAAAT
GGTTATGCTAAGTACGTTGATTGGAGCGCAAACATGCTTGAGGTGGAAGTCAAGAAGCAG
TTGAAAGATGCTGAGCTTCAGGCCAAGAAGACTCGCCTAAGAATCTGGACGAACTATGTA
CCCCCAGCAACAAATTCCAAGGCTATTCATGACCAGAATTTCACAGGAAAGGTGGTTGAG
GTTGTCAGCGGAGATTGTCTCATTATAGCTGATGATTCTCTGCCATTTGGACATCCATCA
GCAGAACGAAGAGTTAATCTTTCAAGTATTAGGACTCCTAAAATGGGGAATCCTCGTAGA
GATGAAAAGCCTGCTCCCTATGCTCGTGAAGCAAAGGAATTTTTGAGAAATCGCCTTATC
GGAAGACAGGTGCATGTTTCAATGGAGTACTCTCGGAAGGTCGGCATGGCAGATGGGACT
GGTGCTCCCGCCAGTGGCACAGATTCAAGGGTGATGGACTTTGGATCTGTATTCCTAGCA
TCAAAGGATGGGGATGATGCATCACCTGCTCCATCTGCTGCAGGCAACCAGTTGGCTGGA
GTGAATGTTGCTGAACTTTTAGTTGGCCGTGGTTTTGCAACTGTTGTTAGACATCGTGAT
TTTGAAGAACGTTCAAACTATTATGATGCCCTTCTCTCAGCAGAATCACGCGCTATTTCC
GGGAAAAGGGGCATGCATTCTCCTAAAGAACCTCCAGTGATGCATGTTACAGACCTGCTA
GCAGGATCGGCAAAGAAAGCTAGAGACTTTTTGCCTTTCTTGCAGCGTAACAGGAGGATG
TCTGCTGTAGTAGAATATGTCCTCAGTGGTCATAGATTCAAACTTTTTATTCCCAAGGAG
ACTTGCAGCATTGCTTTCTCTATCTCTGGAGTGAGATGCCCAGGTCGTGATGAACCCTAC
TCTGAGGAAGCCATTGCCTTGATGAGGAGGAAGATAATGCAGAGGGATGTTGAGATCGAA
GTAGAAACAGTTGATAGAACAGGTACTTTCTTGGGCACATTATGGGAATCGAGATCCAAT
GTGGCAGTGACTCTACTGGAAGCTGGTTTAGCAAGGCTTCAAATTTCTTTTGGTACTGAT
AGAATCCAAGATGCTCATCTCCTCATGCAAGCTGAACAGGCAGCCAAAAGGCAGAAATTG
AAGGTCTGGGAGAATTATGTTGAGGGAGAGGAAGTTGCCAATGGTGGAGCAGCTGAAAAG
CGCCAAAAAGAAGAGGTGAAGGTCTCAGTCACCGAAGTTTTGGGAGGGGGTAAATTTTAT
GTGCAGTTGGTTTCCGACCAGAAAGTAGCTGCCATTCAGAAGCAGCTTGCTTCTCTAAAT
CTTCAAGAGGCTCCTGTAATTGGTGCCTTTAATCCAAAGAAAGGTGATATTGTTCTTGCT
CAATTCAGTGCTGATAATTCATGGAACCGAGCAATGATTGTCAATGCCCCTCGTGGTGCT
GTGGAATCTTCCAAAGACAAGTTTGAAGTTTTCTATATTGATTATGGAAACCAAGAAGTT
GTTTCTTACAGTCAGTTGCGGCCTCTAGAAGCATCTGTTTCCTCCAGTCCTGGTCTAGCT
CAGCTCTGCAGTCTTGCTCATGTTAAAGTTCCTGGGCTAGAGGATGATTATGGTCAGGAA
GCAGCTTACCGGCTAAGTGAGCTTCTTCTAAGTGGACCAAAGGAATTCAGAGCTGCTATT
GAGGAAAAAGACGCTTCAGGTGGAAAAGTCAAAGGTCAAGGAACAGGGACAATCTTTTTG
GTGACTTTGGTTGATCCTGAAACTGATGTCAGCATAAATGCTATCTTGCTTAAGGAAGGA
CTTGCTAGGATGGAGAAAAGGAGGAGGTGGGAGCCCAAGGACAAACAACAGGCTCTAGAT
GAATTGGAGAAGTATCAAACAGAAGCACGACAGAAAAGACTTGCAATGTGGGAGTATGGA
GATGTCGAGTCAGATGATGAGGATTCTGCTATCCCTGCTAAGAAAGCTGCTGGCAAACGG
TGA

Peptide Sequence

PEP ID

XP_016443875.1
PEP Infomation

PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Nicotiana tabacum]
Sequence

MASTGWLKGRVKAVLSGDSLVIMGSSKAEIPPEKSITLASLMAPRLARRGGVDEPFAWQS
REFLRKLCIGKEVTFKVEYTVPSIGREYGTVFLGDKNVSMLVVASGWAKVREQGQQKDAN
PYLKPLQDAEEQAKQQGLGRWSRAPGASEASIRNLPLSAIGDPSIFDARGLLEENKGKLI
EAFVEQVRDGSTLRVYLLPDFQFIQVFVAGIQAPTMGRRATSETVVNASITSDEPNGEST
TEPRATPTTAQRLAASATSVSEVAPDPYGREAKHFTETRVLNRDVRIVLEGVDKFSNLIG
SVYYPDGESAKNLGLELVENGYAKYVDWSANMLEVEVKKQLKDAELQAKKTRLRIWTNYV
PPATNSKAIHDQNFTGKVVEVVSGDCLIIADDSLPFGHPSAERRVNLSSIRTPKMGNPRR
DEKPAPYAREAKEFLRNRLIGRQVHVSMEYSRKVGMADGTGAPASGTDSRVMDFGSVFLA
SKDGDDASPAPSAAGNQLAGVNVAELLVGRGFATVVRHRDFEERSNYYDALLSAESRAIS
GKRGMHSPKEPPVMHVTDLLAGSAKKARDFLPFLQRNRRMSAVVEYVLSGHRFKLFIPKE
TCSIAFSISGVRCPGRDEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGTLWESRSN
VAVTLLEAGLARLQISFGTDRIQDAHLLMQAEQAAKRQKLKVWENYVEGEEVANGGAAEK
RQKEEVKVSVTEVLGGGKFYVQLVSDQKVAAIQKQLASLNLQEAPVIGAFNPKKGDIVLA
QFSADNSWNRAMIVNAPRGAVESSKDKFEVFYIDYGNQEVVSYSQLRPLEASVSSSPGLA
QLCSLAHVKVPGLEDDYGQEAAYRLSELLLSGPKEFRAAIEEKDASGGKVKGQGTGTIFL
VTLVDPETDVSINAILLKEGLARMEKRRRWEPKDKQQALDELEKYQTEARQKRLAMWEYG
DVESDDEDSAIPAKKAAGKR

Transcript Sequence

Gene sequence data has not been registered.